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Joint Spatial-Angular Sparse Coding for dMRI with Separable Dictionaries

机译:具有可分离字典的dmRI联合空间角度稀疏编码

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摘要

Diffusion MRI (dMRI) provides the ability to reconstruct neuronal fibers inthe brain, $\textit{in vivo}$, by measuring water diffusion along angulargradient directions in $q$-space. High angular resolution diffusion imaging(HARDI) can produce better estimates of fiber orientation than the popularlyused diffusion tensor imaging, but the high number of samples needed toestimate diffusivity requires lengthy patient scan times. To accelerate dMRI,compressed sensing (CS) has been utilized by exploiting a sparse dictionaryrepresentation of the data, discovered through sparse coding. The sparser therepresentation, the fewer samples are needed to reconstruct a high resolutionsignal with limited information loss, and so an important area of research hasfocused on finding the sparsest possible representation of dMRI. Currentreconstruction methods however, rely on an angular representation $\textit{pervoxel}$ with added spatial regularization, and so, the global level of sparsitycan be no less than the number of voxels. Therefore, state-of-the-art dMRI CSframeworks may have a fundamental limit to the rate acceleration that can beachieved. In contrast, we propose a joint spatial-angular representation ofdMRI that will allow us to achieve levels of global sparsity that are below thenumber of voxels. A major challenge, however, is the computational complexityof solving a global sparse coding problem over large-scale dMRI. In this work,we present novel adaptations of popular sparse coding algorithms that becomebetter suited for solving large-scale problems by exploiting spatial-angularseparability. Our experiments show that our method achieves significantlysparser representations of HARDI than the state-of-the-art which has thepotential to increase HARDI acceleration to new levels.
机译:扩散MRI(dMRI)通过测量水在$ q $空间中沿角度梯度方向的水扩散,提供了重建大脑中神经元纤维的能力。与普遍使用的扩散张量成像相比,高角分辨率扩散成像(HARDI)可以更好地估计纤维的取向,但是估计扩散率所需的大量样本需要较长的患者扫描时间。为了加速dMRI,已通过利用通过稀疏编码发现的数据的稀疏字典表示来利用压缩感知(CS)。由于稀疏表示,重构信息量有限的高分辨率信号所需的样本较少,因此,重要的研究领域集中在寻找dMRI的尽可能稀疏表示上。然而,当前的重建方法依赖于具有增加的空间正则化的角度表示$ \ textit {pervoxel} $,因此,稀疏性的全局级别可以不少于体素的数量。因此,最新的dMRI CS框架可能会对可实现的速率加速有根本的限制。相比之下,我们提出了dMRI的联合空间-角度表示,这将使我们能够获得低于体素数量的全局稀疏度。然而,一个主要的挑战是在大规模dMRI上解决全局稀疏编码问题的计算复杂性。在这项工作中,我们提出了流行的稀疏编码算法的新颖改编,该算法变得更适合通过利用空间角度可分离性来解决大规模问题。我们的实验表明,与现有技术相比,该方法可以显着地实现HARDI的稀疏表示。

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